Estoy tratando de instalar GDAL a través de pip con la misma versión en el sistema. Pero estoy recibiendo este error:
(app_env) user@server:~$ pip install gdal==3.0.4
Collecting gdal==3.0.4
Using cached GDAL-3.0.4.tar.gz (577 kB)
Building wheels for collected packages: gdal
Building wheel for gdal (setup.py) ... error
ERROR: Command errored out with exit status 1:
command: /home/server/.virtualenvs/wetland_env/bin/python -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-g163k7vu/gdal_049a3c8408cb41aea58042c9b1cf4637/setup.py'"'"'; __file__='"'"'/tmp/pip-install-g163k7vu/gdal_049a3c8408cb41aea58042c9b1cf4637/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-fek8joed
cwd: /tmp/pip-install-g163k7vu/gdal_049a3c8408cb41aea58042c9b1cf4637/
Complete output (36 lines):
running bdist_wheel
running build
running build_py
creating build
creating build/lib.linux-x86_64-3.8
copying gdal.py -> build/lib.linux-x86_64-3.8
copying ogr.py -> build/lib.linux-x86_64-3.8
copying osr.py -> build/lib.linux-x86_64-3.8
copying gdalconst.py -> build/lib.linux-x86_64-3.8
copying gdalnumeric.py -> build/lib.linux-x86_64-3.8
creating build/lib.linux-x86_64-3.8/osgeo
copying osgeo/gnm.py -> build/lib.linux-x86_64-3.8/osgeo
copying osgeo/gdal.py -> build/lib.linux-x86_64-3.8/osgeo
copying osgeo/gdal_array.py -> build/lib.linux-x86_64-3.8/osgeo
copying osgeo/gdalconst.py -> build/lib.linux-x86_64-3.8/osgeo
copying osgeo/gdalnumeric.py -> build/lib.linux-x86_64-3.8/osgeo
copying osgeo/ogr.py -> build/lib.linux-x86_64-3.8/osgeo
copying osgeo/__init__.py -> build/lib.linux-x86_64-3.8/osgeo
copying osgeo/osr.py -> build/lib.linux-x86_64-3.8/osgeo
/home/server/.virtualenvs/wetland_env/lib/python3.8/site-packages/setuptools/lib2to3_ex.py:36: SetuptoolsDeprecationWarning: 2to3 support is deprecated. If the project still requires Python 2 support, please migrate to a single-codebase solution or employ an independent conversion process.
warnings.warn(
Fixing build/lib.linux-x86_64-3.8/gdal.py build/lib.linux-x86_64-3.8/ogr.py build/lib.linux-x86_64-3.8/osr.py build/lib.linux-x86_64-3.8/gdalconst.py build/lib.linux-x86_64-3.8/gdalnumeric.py build/lib.linux-x86_64-3.8/osgeo/gnm.py build/lib.linux-x86_64-3.8/osgeo/gdal.py build/lib.linux-x86_64-3.8/osgeo/gdal_array.py build/lib.linux-x86_64-3.8/osgeo/gdalconst.py build/lib.linux-x86_64-3.8/osgeo/gdalnumeric.py build/lib.linux-x86_64-3.8/osgeo/ogr.py build/lib.linux-x86_64-3.8/osgeo/__init__.py build/lib.linux-x86_64-3.8/osgeo/osr.py
Skipping optional fixer: ws_comma
Fixing build/lib.linux-x86_64-3.8/gdal.py build/lib.linux-x86_64-3.8/ogr.py build/lib.linux-x86_64-3.8/osr.py build/lib.linux-x86_64-3.8/gdalconst.py build/lib.linux-x86_64-3.8/gdalnumeric.py build/lib.linux-x86_64-3.8/osgeo/gnm.py build/lib.linux-x86_64-3.8/osgeo/gdal.py build/lib.linux-x86_64-3.8/osgeo/gdal_array.py build/lib.linux-x86_64-3.8/osgeo/gdalconst.py build/lib.linux-x86_64-3.8/osgeo/gdalnumeric.py build/lib.linux-x86_64-3.8/osgeo/ogr.py build/lib.linux-x86_64-3.8/osgeo/__init__.py build/lib.linux-x86_64-3.8/osgeo/osr.py
Skipping optional fixer: ws_comma
running build_ext
x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../../port -I../../gcore -I../../alg -I../../ogr/ -I../../ogr/ogrsf_frmts -I../../gnm -I../../apps -I/home/server/.virtualenvs/wetland_env/include -I/usr/include/python3.8 -I/home/server/.virtualenvs/wetland_env/lib/python3.8/site-packages/numpy/core/include -I/usr/include -c gdal_python_cxx11_test.cpp -o gdal_python_cxx11_test.o
building 'osgeo._gdal' extension
creating build/temp.linux-x86_64-3.8
creating build/temp.linux-x86_64-3.8/extensions
x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../../port -I../../gcore -I../../alg -I../../ogr/ -I../../ogr/ogrsf_frmts -I../../gnm -I../../apps -I/home/server/.virtualenvs/wetland_env/include -I/usr/include/python3.8 -I/home/server/.virtualenvs/wetland_env/lib/python3.8/site-packages/numpy/core/include -I/usr/include -c extensions/gdal_wrap.cpp -o build/temp.linux-x86_64-3.8/extensions/gdal_wrap.o -I/usr/include/gdal
extensions/gdal_wrap.cpp:173:11: fatal error: Python.h: No such file or directory
# include <Python.h>
^~~~~~~~~~
compilation terminated.
error: command 'x86_64-linux-gnu-gcc' failed with exit status 1
----------------------------------------
ERROR: Failed building wheel for gdal
Running setup.py clean for gdal
Failed to build gdal
Installing collected packages: gdal
Running setup.py install for gdal ... error
ERROR: Command errored out with exit status 1:
command: /home/server/.virtualenvs/wetland_env/bin/python -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-g163k7vu/gdal_049a3c8408cb41aea58042c9b1cf4637/setup.py'"'"'; __file__='"'"'/tmp/pip-install-g163k7vu/gdal_049a3c8408cb41aea58042c9b1cf4637/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /tmp/pip-record-21n68w5w/install-record.txt --single-version-externally-managed --compile --install-headers /home/server/.virtualenvs/wetland_env/include/site/python3.8/gdal
cwd: /tmp/pip-install-g163k7vu/gdal_049a3c8408cb41aea58042c9b1cf4637/
Complete output (36 lines):
running install
running build
running build_py
creating build
creating build/lib.linux-x86_64-3.8
copying gdal.py -> build/lib.linux-x86_64-3.8
copying ogr.py -> build/lib.linux-x86_64-3.8
copying osr.py -> build/lib.linux-x86_64-3.8
copying gdalconst.py -> build/lib.linux-x86_64-3.8
copying gdalnumeric.py -> build/lib.linux-x86_64-3.8
creating build/lib.linux-x86_64-3.8/osgeo
copying osgeo/gnm.py -> build/lib.linux-x86_64-3.8/osgeo
copying osgeo/gdal.py -> build/lib.linux-x86_64-3.8/osgeo
copying osgeo/gdal_array.py -> build/lib.linux-x86_64-3.8/osgeo
copying osgeo/gdalconst.py -> build/lib.linux-x86_64-3.8/osgeo
copying osgeo/gdalnumeric.py -> build/lib.linux-x86_64-3.8/osgeo
copying osgeo/ogr.py -> build/lib.linux-x86_64-3.8/osgeo
copying osgeo/__init__.py -> build/lib.linux-x86_64-3.8/osgeo
copying osgeo/osr.py -> build/lib.linux-x86_64-3.8/osgeo
/home/server/.virtualenvs/wetland_env/lib/python3.8/site-packages/setuptools/lib2to3_ex.py:36: SetuptoolsDeprecationWarning: 2to3 support is deprecated. If the project still requires Python 2 support, please migrate to a single-codebase solution or employ an independent conversion process.
warnings.warn(
Fixing build/lib.linux-x86_64-3.8/gdal.py build/lib.linux-x86_64-3.8/ogr.py build/lib.linux-x86_64-3.8/osr.py build/lib.linux-x86_64-3.8/gdalconst.py build/lib.linux-x86_64-3.8/gdalnumeric.py build/lib.linux-x86_64-3.8/osgeo/gnm.py build/lib.linux-x86_64-3.8/osgeo/gdal.py build/lib.linux-x86_64-3.8/osgeo/gdal_array.py build/lib.linux-x86_64-3.8/osgeo/gdalconst.py build/lib.linux-x86_64-3.8/osgeo/gdalnumeric.py build/lib.linux-x86_64-3.8/osgeo/ogr.py build/lib.linux-x86_64-3.8/osgeo/__init__.py build/lib.linux-x86_64-3.8/osgeo/osr.py
Skipping optional fixer: ws_comma
Fixing build/lib.linux-x86_64-3.8/gdal.py build/lib.linux-x86_64-3.8/ogr.py build/lib.linux-x86_64-3.8/osr.py build/lib.linux-x86_64-3.8/gdalconst.py build/lib.linux-x86_64-3.8/gdalnumeric.py build/lib.linux-x86_64-3.8/osgeo/gnm.py build/lib.linux-x86_64-3.8/osgeo/gdal.py build/lib.linux-x86_64-3.8/osgeo/gdal_array.py build/lib.linux-x86_64-3.8/osgeo/gdalconst.py build/lib.linux-x86_64-3.8/osgeo/gdalnumeric.py build/lib.linux-x86_64-3.8/osgeo/ogr.py build/lib.linux-x86_64-3.8/osgeo/__init__.py build/lib.linux-x86_64-3.8/osgeo/osr.py
Skipping optional fixer: ws_comma
running build_ext
x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../../port -I../../gcore -I../../alg -I../../ogr/ -I../../ogr/ogrsf_frmts -I../../gnm -I../../apps -I/home/server/.virtualenvs/wetland_env/include -I/usr/include/python3.8 -I/home/server/.virtualenvs/wetland_env/lib/python3.8/site-packages/numpy/core/include -I/usr/include -c gdal_python_cxx11_test.cpp -o gdal_python_cxx11_test.o
building 'osgeo._gdal' extension
creating build/temp.linux-x86_64-3.8
creating build/temp.linux-x86_64-3.8/extensions
x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../../port -I../../gcore -I../../alg -I../../ogr/ -I../../ogr/ogrsf_frmts -I../../gnm -I../../apps -I/home/server/.virtualenvs/wetland_env/include -I/usr/include/python3.8 -I/home/server/.virtualenvs/wetland_env/lib/python3.8/site-packages/numpy/core/include -I/usr/include -c extensions/gdal_wrap.cpp -o build/temp.linux-x86_64-3.8/extensions/gdal_wrap.o -I/usr/include/gdal
extensions/gdal_wrap.cpp:173:11: fatal error: Python.h: No such file or directory
# include <Python.h>
^~~~~~~~~~
compilation terminated.
error: command 'x86_64-linux-gnu-gcc' failed with exit status 1
----------------------------------------
ERROR: Command errored out with exit status 1: /home/server/.virtualenvs/wetland_env/bin/python -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-g163k7vu/gdal_049a3c8408cb41aea58042c9b1cf4637/setup.py'"'"'; __file__='"'"'/tmp/pip-install-g163k7vu/gdal_049a3c8408cb41aea58042c9b1cf4637/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /tmp/pip-record-21n68w5w/install-record.txt --single-version-externally-managed --compile --install-headers /home/server/.virtualenvs/wetland_env/include/site/python3.8/gdal Check the logs for full command output.
